Basic Information
Locus ID:
Tel7E01G466200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 310514172 | 310521972 | + | Tel7E01G466200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 65,412.15 Da | 54.03 | 61.90 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 257 | 1.0E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 274 | 322 | 2.9E-10 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 550 | 578 | 1.26E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 264 | 7.42E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 324 | 1.29E-16 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 548 | 579 | 2.0E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 253 | 515 | 5.6E-86 | - |
| SMART | SM00647 | ibrneu5 | 196 | 257 | 3.3E-19 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 270 | 331 | 0.059 | IPR002867 |
| SMART | SM00547 | zf_4 | 553 | 577 | 4.5E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 126 | 335 | 38.316223 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 551 | 579 | 8.67092 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 555 | 574 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 554 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_044437633.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Triticum aestivum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6TQL7 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology