Basic Information
Locus ID:
Tel7E01G446000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 286636378 | 286640605 | + | Tel7E01G446000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 43,257.86 Da | 38.58 | 68.11 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 111 | 183 | 1.11946E-42 | - |
| CDD | cd12354 | RRM3_TIA1_like | 232 | 306 | 1.47464E-31 | - |
| CDD | cd12352 | RRM1_TIA1_like | 27 | 97 | 8.30079E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 93 | 1.5E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 234 | 300 | 5.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 179 | 1.3E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 23 | 189 | 8.79E-39 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 220 | 310 | 5.02E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 207 | 310 | 4.6E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 8 | 109 | 1.6E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 110 | 203 | 2.4E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 111 | 182 | 4.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 233 | 302 | 4.8E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 26 | 95 | 1.3E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 99 | 15.32331 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 186 | 13.737158 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 232 | 306 | 15.391531 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_044430405.1 | RNA-binding protein 208-like [Triticum aestivum] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RKZ2 | Oligouridylate binding protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology