Basic Information
Locus ID:
Tel7E01G244100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 129676558 | 129680262 | - | Tel7E01G244100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 55,064.56 Da | 53.50 | 77.15 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 414 | 455 | 2.5648E-23 | - |
| Pfam | PF13414 | TPR repeat | 157 | 192 | 2.9E-6 | - |
| Pfam | PF04564 | U-box domain | 410 | 480 | 5.2E-19 | IPR003613 |
| SUPERFAMILY | SSF48452 | TPR-like | 10 | 138 | 9.86E-29 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 149 | 261 | 5.2E-36 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 405 | 482 | 3.09E-26 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 144 | 271 | 9.5E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 8 | 143 | 1.3E-28 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 484 | 8.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 413 | 476 | 4.0E-27 | IPR003613 |
| SMART | SM00028 | tpr_5 | 45 | 78 | 0.11 | IPR019734 |
| SMART | SM00028 | tpr_5 | 11 | 44 | 320.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 150 | 183 | 6.6E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 218 | 251 | 0.68 | IPR019734 |
| SMART | SM00028 | tpr_5 | 184 | 217 | 4.4E-4 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 150 | 183 | 9.6469 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 409 | 483 | 39.223598 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 161 | - | - |
| Coils | Coil | Coil | 337 | 392 | - | - |
| Coils | Coil | Coil | 122 | 155 | - | - |
| Coils | Coil | Coil | 288 | 315 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12400.1 | stress-inducible protein, putative. | 0 |
| RefSeq | XP_020151999.1 | U-box domain-containing protein 70 isoform X2 [Aegilops tauschii subsp. strangulata] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6S992 | U-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |