Basic Information
Locus ID:
Tel7E01G139800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 70424572 | 70427099 | - | Tel7E01G139800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 49,073.14 Da | 41.51 | 75.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 168 | 9.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 171 | 210 | 0.21 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 28 | 347 | 1.16E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 69 | 352 | 2.5E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 68 | 1.6E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 170 | 211 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 168 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 257 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 21 | 60 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 304 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 134 | 169 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 27 | 69 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 169 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 155 | 169 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_047072562.1 | protein TPR1 isoform X2 [Lolium rigidum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453EMK9 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11623 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020459, gene:ENSEOMG00000023519 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30099700, pistato.v30131470, pistato.v30239300 ... |
| Apiaceae | Apium graveolens | 4 | Ag1G00504, Ag4G00115, Ag8G00391, Ag9G01177 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1192 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G011540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G349600, Tel7E01G139800 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1074 |
| Rhizophoraceae | Rhizophora apiculata | 7 | nbisL1-mrna-12322, nbisL1-mrna-17438, nbisL1-mrna-17859 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17231, nbisL1-mrna-23337, nbisL1-mrna-24305 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu33348 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006615 |