Basic Information
Locus ID:
Tel7E01G124800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 62483853 | 62487336 | + | Tel7E01G124800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 27,245.05 Da | 59.07 | 51.49 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 152 | 222 | 3.0E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 130 | 251 | 1.61E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 146 | 237 | 3.6E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 151 | 228 | 1.0E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 150 | 236 | 11.519956 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_048542040.1 | nuclear speckle RNA-binding protein A-like isoform X2 [Triticum urartu] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7V0S8 | RRM domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology