Basic Information
Locus ID:
Tel7E01G1011500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 734477590 | 734482065 | - | Tel7E01G1011500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 35,918.56 Da | 43.01 | 93.80 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 188 | 226 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 163 | 181 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 28 | 313 | 1.18E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 311 | 3.1E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 16 | 57 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 60 | 99 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 226 | 6.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 267 | 0.0083 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 182 | 0.91 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 228 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 191 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 235 | 12.379869 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 254 | 268 | 4.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 4.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 213 | 227 | 4.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46340.1 | SPA (suppressor of phyA-105) protein family. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. | 0 |
| RefSeq | XP_048541722.1 | uncharacterized protein LOC125520751 isoform X5 [Triticum urartu] | 0 |
| O35142 | Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8R7VCS2 | Coatomer subunit beta'-2 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology