Basic Information
Locus ID:
Tel7E01G098200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 47305032 | 47307015 | + | Tel7E01G098200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 23,444.94 Da | 45.51 | 76.62 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 124 | 160 | 7.1E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 117 | 162 | 4.15E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 60 | 3.95E-9 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 116 | 163 | 1.1E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 57 | 8.3E-12 | - |
| SMART | SM00165 | uba_6 | 122 | 162 | 8.0E-6 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 56 | 9.678375 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 121 | 163 | 11.438427 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_044951342.1 | ubiquitin receptor RAD23b-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | F2EBG8 | Ubiquitin receptor RAD23 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology