Basic Information
Locus ID:
Tel6E01G702600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 546185148 | 546190412 | + | Tel6E01G702600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 48,900.81 Da | 57.07 | 89.93 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 108 | 147 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 257 | 415 | 1.91E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 93 | 174 | 5.89E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 101 | 150 | 4.0E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 436 | 1.1E-8 | IPR032675 |
| SMART | SM00256 | fbox_2 | 112 | 152 | 0.007 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 106 | 153 | 8.83511 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 67 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58880.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_037445269.1 | putative F-box/FBD/LRR-repeat protein At5g62970 [Triticum dicoccoides] | 0 |
| Q9LXR4 | Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana OX=3702 GN=At3g58880 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6NWS0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.203, CH03.323 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041302, gene-QYE76_041311 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G031700, gene-BS78_02G031800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404642, Pt_Chr0404705, Pt_Chr0604369 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G701900, Tel6E01G702100, Tel6E01G702600 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG057750, gene_TRIDC6BG067240 |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G389500.1, TraesCS6A02G390000.1 ... |