HalophFGD

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Basic Information
Locus ID: Tel6E01G701900
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr6 546025562 546028966 + Tel6E01G701900
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.78 57,307.90 Da 49.72 100.24 0.08
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 40 78 1.5E-4 IPR001810
SUPERFAMILY SSF52047 RNI-like 200 401 1.29E-11 -
SUPERFAMILY SSF81383 F-box domain 31 101 5.63E-10 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 197 417 8.1E-10 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G80960.5 - 0
RefSeq XP_044417103.1 F-box protein At1g80960-like [Triticum aestivum] 0
Swiss-Prot Q9SAG4 F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 0
TrEMBL A0A3B6QNZ8 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 2 AH03.203, CH03.323
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.6HG0629230.1
Poaceae Lolium multiflorum 2 gene-QYE76_041302, gene-QYE76_041311
Poaceae Paspalum vaginatum 2 gene-BS78_02G031700, gene-BS78_02G031800
Poaceae Puccinellia tenuiflora 3 Pt_Chr0404642, Pt_Chr0404705, Pt_Chr0604369
Poaceae Thinopyrum elongatum 4 Tel6E01G701900, Tel6E01G702100, Tel6E01G702600 ...
Tel6E01G703100
Poaceae Triticum dicoccoides 2 gene_TRIDC6AG057750, gene_TRIDC6BG067240
Poaceae Triticum aestivum 7 TraesCS6A02G389500.1, TraesCS6A02G390000.1 ...
TraesCS6B02G428700.1, TraesCS6B02G429800.1, TraesCS6B02G429900.2, TraesCS6D02G373500.1, TraesCS6D02G374100.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.