Basic Information
Locus ID:
Tel6E01G692100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 541946369 | 541947631 | + | Tel6E01G692100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 45,826.03 Da | 45.72 | 103.33 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 54 | 3.42788E-25 | - |
| Pfam | PF04564 | U-box domain | 8 | 80 | 8.8E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 85 | 3.53E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 191 | 382 | 3.06E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 405 | 1.2E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 83 | 7.6E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 76 | 5.0E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 83 | 31.846287 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_048533985.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum urartu] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QY10 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology