Basic Information
Locus ID:
Tel6E01G688100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 539830132 | 539835657 | + | Tel6E01G688100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 98,405.08 Da | 42.94 | 71.96 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 176 | 301 | 2.83985E-56 | - |
| Pfam | PF01426 | BAH domain | 178 | 299 | 6.0E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 478 | 837 | 4.2E-33 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 325 | 837 | 1.31E-77 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 629 | 803 | 2.0E-251 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 123 | 285 | 3.6E-52 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 326 | 856 | 2.0E-251 | - |
| SMART | SM00439 | BAH_4 | 177 | 300 | 1.0E-18 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 177 | 300 | 19.578321 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 324 | 844 | 46.40556 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 481 | 493 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 325 | 341 | 1.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 524 | 538 | 1.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 570 | 583 | 1.8E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020182946.1 | DNA (cytosine-5)-methyltransferase 1 isoform X2 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QNR1 | DNA (cytosine-5-)-methyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology