Basic Information
Locus ID:
Tel6E01G639600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 514963455 | 514976034 | + | Tel6E01G639600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 92,438.82 Da | 69.32 | 53.97 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 407 | 430 | 0.0015 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 373 | 401 | 3.2E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 366 | 402 | 2.16E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 365 | 403 | 6.0E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 404 | 435 | 4.5E-9 | - |
| SMART | SM00547 | zf_4 | 375 | 399 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 408 | 432 | 6.0E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 406 | 435 | 9.382329 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 373 | 402 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 410 | 429 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 377 | 396 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 819 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_044404809.1 | uncharacterized protein LOC123128778 [Triticum aestivum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6NU10 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology