Basic Information
Locus ID:
Tel6E01G603000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 496557497 | 496563110 | - | Tel6E01G603000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 87,851.62 Da | 51.28 | 76.24 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 260 | 393 | 3.75892E-62 | - |
| CDD | cd17920 | DEXHc_RecQ | 58 | 259 | 1.30362E-107 | - |
| Pfam | PF16124 | RecQ zinc-binding | 396 | 468 | 1.3E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 279 | 382 | 1.2E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 74 | 239 | 1.0E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 405 | 3.09E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 259 | 2.4E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 260 | 485 | 7.6E-65 | IPR027417 |
| SMART | SM00490 | helicmild6 | 303 | 384 | 4.5E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 66 | 268 | 5.2E-32 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 59 | 474 | 1.6E-145 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 78 | 252 | 23.643461 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 272 | 428 | 18.724937 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 796 | - | - |
| Coils | Coil | Coil | 551 | 571 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_044421186.1 | ATP-dependent DNA helicase Q-like 3 [Triticum aestivum] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | N1QV27 | ATP-dependent DNA helicase Q5 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology