Basic Information
Locus ID:
Tel6E01G558000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 468203472 | 468204836 | + | Tel6E01G558000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 49,192.74 Da | 45.15 | 102.36 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 51 | 92 | 7.35464E-22 | - |
| Pfam | PF04564 | U-box domain | 47 | 118 | 1.4E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 211 | 443 | 3.96E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 120 | 1.59E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 222 | 447 | 5.2E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 119 | 4.7E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 50 | 113 | 2.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 46 | 120 | 34.155014 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037451612.1 | U-box domain-containing protein 21-like [Triticum dicoccoides] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PS47 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology