Basic Information
Locus ID:
Tel6E01G490800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 417094618 | 417096068 | - | Tel6E01G490800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 43,016.74 Da | 48.02 | 66.78 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 22 | 78 | 3.7E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 13 | 93 | 8.01E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 12 | 90 | 3.8E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 19 | 86 | 1.5E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 90 | 10.991239 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 264 | - | - |
| Coils | Coil | Coil | 237 | 257 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_044413638.1 | binding partner of ACD11 1-like isoform X1 [Triticum aestivum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PQH3 | RRM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology