Basic Information
Locus ID:
Tel6E01G448200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 373387990 | 373398198 | + | Tel6E01G448200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 103,836.21 Da | 59.04 | 78.91 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 363 | 4.4E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 695 | 756 | 4.6E-8 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 819 | 895 | 1.31E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 693 | 758 | 2.32E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 389 | 2.68E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 692 | 773 | 9.7E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 817 | 899 | 4.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 131 | 393 | 8.4E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 198 | 372 | 5.4E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 819 | 886 | 0.0071 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 693 | 757 | 2.0E-8 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 692 | 758 | 12.742222 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 137 | 388 | 16.26976 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 818 | 887 | 11.212814 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 915 | - | - |
| Coils | Coil | Coil | 875 | 895 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_037447572.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Triticum dicoccoides] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7USQ1 | protein-serine/threonine phosphatase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology