Basic Information
Locus ID:
Tel6E01G417600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 336897631 | 336909586 | - | Tel6E01G417600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 65,960.46 Da | 54.84 | 56.39 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 131 | 181 | 5.53199E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 279 | 327 | 6.3E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 201 | 262 | 1.3E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 269 | 2.47E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 281 | 329 | 2.05E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 212 | 7.46E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 558 | 584 | 3.61E-5 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 556 | 587 | 4.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 212 | 2.5E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 258 | 513 | 1.9E-86 | - |
| SMART | SM00547 | zf_4 | 560 | 584 | 4.3E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 200 | 262 | 8.8E-24 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 275 | 336 | 0.042 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 127 | 340 | 51.116684 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 175 | 8.520721 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 562 | 581 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037447341.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PKL5 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology