Basic Information
Locus ID:
Tel6E01G403600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 310277454 | 310347538 | - | Tel6E01G403600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 478,400.03 Da | 41.79 | 90.03 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2671 | 2775 | 1.70431E-6 | - |
| Pfam | PF00168 | C2 domain | 2672 | 2777 | 1.2E-5 | IPR000008 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.6E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 381 | 1.5E-61 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 792 | 1.1E-27 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2031 | 2195 | 7.6E-15 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2334 | 2416 | 1.1E-7 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3295 | 3614 | 3.5E-15 | IPR009543 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3864 | 4006 | 3.7E-9 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2667 | 2776 | 2.13E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2655 | 2794 | 2.3E-7 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2650 | 2789 | 9.171793 | IPR000008 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_037456162.1 | uncharacterized protein LOC119326650 [Triticum dicoccoides] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PLH9 | C2 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology