Basic Information
Locus ID:
Tel6E01G400200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 300394270 | 300398991 | + | Tel6E01G400200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 80,664.14 Da | 31.04 | 91.39 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 334 | 1.27178E-172 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 351 | 656 | 7.04442E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 356 | 652 | 6.1E-51 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 334 | 2.62E-47 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 350 | 656 | 7.59E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 334 | 1.6E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 350 | 657 | 5.8E-48 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 335 | 29.506071 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 351 | 657 | 40.070324 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_037453209.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Triticum dicoccoides] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PJW8 | glycerophosphodiester phosphodiesterase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology