Basic Information
Locus ID:
Tel6E01G396400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 295934031 | 295943564 | + | Tel6E01G396400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 49,776.05 Da | 47.16 | 63.76 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 50 | 135 | 1.7608E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 260 | 324 | 3.51664E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 53 | 135 | 1.9E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 260 | 327 | 5.2E-15 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 47 | 149 | 7.06E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 248 | 332 | 4.32E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 38 | 152 | 1.2E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 243 | 336 | 4.6E-21 | IPR036910 |
| SMART | SM01014 | ARID_2 | 45 | 135 | 3.8E-26 | - |
| SMART | SM00501 | bright_3 | 49 | 140 | 4.7E-28 | IPR001606 |
| SMART | SM00398 | hmgende2 | 259 | 328 | 2.9E-19 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 48 | 139 | 25.735796 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 260 | 327 | 15.248796 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 444 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_037447024.1 | high mobility group B protein 9-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NPT4 | ARID domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology