Basic Information
Locus ID:
Tel6E01G359200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 224263220 | 224266835 | + | Tel6E01G359200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 44,459.92 Da | 43.81 | 72.54 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 271 | 3.80603E-158 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 271 | 9.4E-64 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 326 | 7.19E-93 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 272 | 339 | 3.2E-8 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 21 | 271 | 7.0E-88 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 271 | 3.6E-133 | IPR003084 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 268 | 397 | 2.1E-16 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 2.7E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 2.7E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 2.4E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 2.7E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 2.4E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 2.7E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 2.7E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 2.7E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 2.7E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 357 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_037446876.1 | histone deacetylase 6-like [Triticum dicoccoides] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | M7YME0 | Histone deacetylase OS=Triticum urartu OX=4572 GN=TRIUR3_32991 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology