Basic Information
Locus ID:
Tel6E01G355300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 215070548 | 215071846 | - | Tel6E01G355300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 45,668.42 Da | 51.59 | 101.41 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 21 | 62 | 6.29941E-22 | - |
| Pfam | PF04564 | U-box domain | 20 | 84 | 1.7E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 86 | 1.3E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 182 | 410 | 2.06E-7 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 91 | 1.8E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 93 | 415 | 1.1E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 20 | 83 | 3.1E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 16 | 90 | 36.15414 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_048537287.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum urartu] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NQ67 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology