Basic Information
Locus ID:
Tel6E01G308900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 167863884 | 167873188 | - | Tel6E01G308900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 39,757.74 Da | 47.07 | 78.75 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.21047E-25 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 8.1E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 323 | 359 | 2.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 183 | 1.4E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 242 | 296 | 3.5E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 141 | 193 | 6.32E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 307 | 365 | 4.18E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 3.45E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 238 | 305 | 1.07E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 188 | 4.6E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 232 | 297 | 3.9E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.6E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 315 | 363 | 2.1E-23 | - |
| SMART | SM00165 | uba_6 | 324 | 361 | 5.0E-8 | IPR015940 |
| SMART | SM00727 | CBM | 240 | 283 | 7.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 145 | 185 | 6.6E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-18 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 367 | 4.0E-118 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 186 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.974802 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 322 | 362 | 14.522856 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 349 | 4.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 365 | 4.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 268 | 290 | 4.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 318 | 334 | 4.5E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - | - |
| Coils | Coil | Coil | 269 | 289 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_044419025.1 | ubiquitin receptor RAD23b-like [Triticum aestivum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A453NHX9 | Ubiquitin receptor RAD23 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology