HalophFGD

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Basic Information
Locus ID: Tel6E01G278500
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: F-box-like
Maps and Mapping Data
Chromosome Start End Strand ID
chr6 146020179 146021426 + Tel6E01G278500
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.00 46,525.91 Da 52.87 91.64 -0.13
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 5 39 1.6E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 4 43 5.49E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 3 44 1.9E-7 -
SMART SM00256 fbox_2 8 48 5.3E-5 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_024313675.1 uncharacterized protein LOC106865926 [Brachypodium distachyon] 0
TrEMBL M8C4W8 Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 2 AH01.909, CH01.1086
Poaceae Oryza coarctata 1 Oco05G021200
Poaceae Oryza sativa 1 LOC_Os03g49690.1
Poaceae Sporobolus alterniflorus 12 Chr0G019060, Chr0G019110, Chr0G019180, Chr0G020660 ...
Chr0G020670, Chr0G025050, Chr0G025080, Chr0G027940, Chr25G003820, Chr25G003860, Chr25G003900, Chr30G003820
Poaceae Thinopyrum elongatum 1 Tel6E01G278500
Poaceae Triticum aestivum 2 TraesCS6A02G119500.1, TraesCS6B02G147800.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.