Basic Information
Locus ID:
Tel6E01G240500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 124146383 | 124150016 | + | Tel6E01G240500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 74,518.63 Da | 31.43 | 73.75 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 364 | 470 | 2.02009E-28 | IPR029413 |
| CDD | cd10320 | RGL4_N | 37 | 330 | 1.26572E-71 | - |
| CDD | cd10317 | RGL4_C | 482 | 668 | 7.82149E-48 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 480 | 666 | 3.4E-48 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 393 | 466 | 5.9E-23 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 231 | 2.0E-66 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 477 | 668 | 1.45E-37 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 40 | 287 | 1.57E-7 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 365 | 468 | 7.06E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 477 | 668 | 5.0E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 362 | 467 | 1.1E-8 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 34 | 328 | 1.0E-13 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_037450729.1 | rhamnogalacturonate lyase B-like [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6QBB8 | rhamnogalacturonan endolyase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology