Basic Information
Locus ID:
Tel6E01G240200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 123420642 | 123423574 | - | Tel6E01G240200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 70,385.98 Da | 33.43 | 74.62 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 37 | 330 | 7.23395E-70 | - |
| CDD | cd10317 | RGL4_C | 471 | 630 | 1.58692E-39 | - |
| CDD | cd10316 | RGL4_M | 364 | 455 | 5.55126E-27 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 387 | 454 | 4.3E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 38 | 231 | 1.7E-65 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 484 | 628 | 1.4E-38 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 474 | 630 | 3.23E-29 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 362 | 454 | 2.75E-7 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 36 | 292 | 2.83E-7 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 481 | 630 | 4.3E-12 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 34 | 329 | 2.5E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 361 | 459 | 5.9E-9 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_044418595.1 | rhamnogalacturonate lyase B-like [Triticum aestivum] | 0 |
| TrEMBL | A0A3B6QBB8 | rhamnogalacturonan endolyase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology