Basic Information
Locus ID:
Tel6E01G228400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 116422830 | 116423348 | - | Tel6E01G228400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 18,617.31 Da | 50.42 | 91.44 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00348 | Polyprenyl synthetase | 91 | 172 | 1.5E-21 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 69 | 173 | 1.1E-36 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 66 | 173 | 2.7E-43 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 142 | 158 | - | IPR033749 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_037446095.1 | geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Triticum dicoccoides] | 0 |
| P80042 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=GGPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NMI7 | Geranylgeranyl pyrophosphate synthase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology