Basic Information
Locus ID:
Tel6E01G226400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 114979908 | 114985288 | + | Tel6E01G226400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 87,346.70 Da | 42.92 | 84.63 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 59 | 92 | 0.0012 | IPR001680 |
| Pfam | PF00646 | F-box domain | 392 | 432 | 6.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 392 | 444 | 3.92E-11 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 272 | 5.5E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 277 | 8.8E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 184 | 228 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 181 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 135 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 92 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 45 | 66.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 58 | 93 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 237 | 9.372231 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 79 | 93 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 357 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044418526.1 | protein TPR1-like isoform X1 [Triticum aestivum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453N7S2 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0527160.1 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G767400, Tel6E01G226400 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG012990 |
| Poaceae | Triticum aestivum | 3 | TraesCS5B02G497300.1, TraesCS6A02G100500.1 ... |