Basic Information
Locus ID:
Tel6E01G223600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 113829856 | 113841167 | - | Tel6E01G223600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 61,757.56 Da | 23.78 | 106.42 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 229 | 331 | 7.07599E-26 | - |
| CDD | cd00030 | C2 | 400 | 522 | 3.11473E-23 | - |
| Pfam | PF00168 | C2 domain | 398 | 515 | 4.0E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 227 | 331 | 1.4E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 37 | 214 | 1.1E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 394 | 538 | 3.41E-28 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 225 | 357 | 1.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 377 | 539 | 2.2E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 223 | 364 | 4.9E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 399 | 521 | 1.1E-15 | IPR000008 |
| SMART | SM00239 | C2_3c | 228 | 328 | 2.6E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 205 | 329 | 20.655243 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 380 | 521 | 18.574446 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 32 | 214 | 28.485199 | IPR031468 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_037445594.1 | synaptotagmin-5-like [Triticum dicoccoides] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453N7E9 | Synaptotagmin-5 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology