Basic Information
Locus ID:
Tel6E01G195300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 99359197 | 99372214 | - | Tel6E01G195300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 34,825.56 Da | 49.05 | 77.39 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 177 | 305 | 3.06168E-61 | - |
| CDD | cd16571 | RING-HC_SIAHs | 61 | 99 | 6.5166E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 105 | 304 | 6.3E-78 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 116 | 308 | 1.11E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 103 | 8.72E-7 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 178 | 304 | 1.6E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 171 | 1.0E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 105 | 5.4E-8 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 116 | 176 | 14.356163 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 99 | 9.89275 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_037452002.1 | E3 ubiquitin-protein ligase SINAT2-like [Triticum dicoccoides] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | W5GSC0 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology