Basic Information
Locus ID:
Tel6E01G147800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 74421230 | 74425093 | - | Tel6E01G147800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 77,588.80 Da | 30.82 | 80.30 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 366 | 467 | 4.0943E-30 | IPR029413 |
| CDD | cd10320 | RGL4_N | 44 | 327 | 3.79272E-65 | - |
| CDD | cd10317 | RGL4_C | 479 | 668 | 5.64469E-48 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 477 | 667 | 1.0E-46 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 232 | 6.6E-67 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 390 | 460 | 5.0E-21 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 37 | 328 | 1.26E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 474 | 668 | 2.38E-37 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 363 | 465 | 9.61E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 363 | 464 | 5.5E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 474 | 668 | 2.5E-13 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 35 | 330 | 3.1E-13 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_020195808.1 | rhamnogalacturonate lyase B-like [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A3B6NKZ9 | rhamnogalacturonan endolyase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology