HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Tel6E01G134400
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr6 69743494 69744633 - Tel6E01G134400
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.33 42,530.31 Da 45.88 95.30 -0.15
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 12 46 2.4E-6 IPR001810
SUPERFAMILY SSF81383 F-box domain 12 79 1.57E-12 IPR036047
Gene3D G3DSA:1.20.1280.50 - 11 48 2.4E-7 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G16210.1 F-box family protein. 0
RefSeq XP_020148616.1 putative F-box protein At3g16210 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot Q9LU24 Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 0
TrEMBL A0A3B6QCK5 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Thinopyrum elongatum 1 Tel6E01G134400
Poaceae Triticum aestivum 3 TraesCS6A02G054100.1.cds1, TraesCS6D02G056100.1.cds1 ...
TraesCS6D02G056200.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.