Basic Information
Locus ID:
Tel6E01G049100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26972541 | 26974455 | + | Tel6E01G049100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 58,972.31 Da | 40.74 | 89.36 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 300 | 331 | 1.4E-7 | IPR005174 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 422 | 492 | 2.4E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 417 | 509 | 3.63E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 385 | 509 | 3.9E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 421 | 495 | 7.4E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 420 | 499 | 13.992989 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37220.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | 0 |
| RefSeq | XP_044415940.1 | uncharacterized protein LOC123140719 [Triticum aestivum] | 0 |
| P28644 | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | M8C426 | 31 kDa ribonucleoprotein, chloroplastic OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology