Basic Information
Locus ID:
Tel6E01G047400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 25862461 | 25866236 | + | Tel6E01G047400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 31,977.24 Da | 29.65 | 94.41 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 20 | 228 | 1.3E-57 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 17 | 249 | 5.63E-44 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 16 | 189 | 1.8E-46 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 190 | 265 | 3.2E-36 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 73 | 88 | 1.2E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 21 | 34 | 1.2E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 178 | 198 | 1.2E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044415925.1 | ribosome-inactivating protein-like [Triticum aestivum] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QBD4 | rRNA N-glycosylase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology