Basic Information
Locus ID:
Tel6E01G044100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24545927 | 24549022 | + | Tel6E01G044100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 75,948.39 Da | 46.34 | 82.28 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 178 | 2.2E-4 | IPR001680 |
| Pfam | PF00646 | F-box domain | 428 | 467 | 2.4E-5 | IPR001810 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 371 | 1.4E-40 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 428 | 480 | 5.1E-8 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 426 | 4.8E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 20 | 231 | 1.1E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 180 | 221 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 314 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 131 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 178 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 267 | 67.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 31 | 70 | 0.075 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 37 | 79 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 179 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 179 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 165 | 179 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044407189.1 | uncharacterized protein LOC123131593 [Triticum aestivum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6UAG8 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0540670.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G044100 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G071400.2 |