HalophFGD

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Basic Information
Locus ID: Tel6E01G043000
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: WD domain, G-beta repeat
Maps and Mapping Data
Chromosome Start End Strand ID
chr6 23972962 23973817 + Tel6E01G043000
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.01 11,399.79 Da 55.63 79.31 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF50978 WD40 repeat-like 34 88 2.56E-6 IPR036322
Gene3D G3DSA:2.130.10.10 - 30 101 5.9E-7 IPR015943
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 37 79 9.071468 IPR001680
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G27030.1 TOPLESS-related 3. 0
RefSeq XP_044407189.1 uncharacterized protein LOC123131593 [Triticum aestivum] 0
Swiss-Prot Q5NBT9 Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 0
TrEMBL A0A3B6UAU1 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Casuarinaceae Casuarina glauca 1 Cgl04G1160
Poaceae Thinopyrum elongatum 1 Tel6E01G043000
Poaceae Zea mays 6 Zm00001eb006070_P001, Zm00001eb090220_P001 ...
Zm00001eb146010_P001, Zm00001eb183870_P001, Zm00001eb199680_P001, Zm00001eb381160_P001
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-7255
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