Basic Information
Locus ID:
Tel6E01G042600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 23732270 | 23739370 | + | Tel6E01G042600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 28,512.78 Da | 60.48 | 81.85 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 38 | 103 | 1.34778E-34 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 37 | 84 | 4.7E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 119 | 201 | 8.4E-25 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 30 | 102 | 2.49E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 40 | 115 | 2.9E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 28 | 87 | 4.1E-34 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 28 | 88 | 29.099619 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 118 | 208 | 14.157187 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 65 | 86 | 5.3E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 50 | 65 | 5.3E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 30 | 50 | 5.3E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 237 | - | - |
| Coils | Coil | Coil | 152 | 190 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_048552106.1 | MADS-box protein SOC1-like [Triticum urartu] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8R7VLN7 | MADS-box transcription factor 50 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology