Basic Information
Locus ID:
Tel5E01G904500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 624837340 | 624844307 | - | Tel5E01G904500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 85,543.24 Da | 47.78 | 65.87 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 494 | 778 | 1.01284E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 536 | 567 | 3.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 745 | 778 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 695 | 4.2E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 3.1E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 498 | 525 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 575 | 610 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 493 | 778 | 4.83E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 625 | 778 | 2.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 473 | 624 | 1.1E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 525 | 2.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 739 | 778 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 657 | 695 | 2.2E-6 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.417476 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 746 | 778 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 612 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 664 | 704 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 620 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 746 | 778 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 535 | 567 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 567 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 534 | 8.904377 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 554 | 568 | 9.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 765 | 778 | 9.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 512 | 526 | 9.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 407 | - | - |
| Coils | Coil | Coil | 90 | 110 | - | - |
| Coils | Coil | Coil | 324 | 372 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_044400623.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Triticum aestivum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6N3A0 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology