Basic Information
Locus ID:
Tel5E01G888800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 618038018 | 618039707 | - | Tel5E01G888800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 46,705.26 Da | 39.41 | 83.44 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 85 | 393 | 2.2E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 47 | 434 | 2.99E-121 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 35 | 422 | 4.4E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 283 | 304 | 610.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 180 | 229 | 960.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 253 | 273 | 1900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 312 | 333 | 2300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 230 | 251 | 140.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 260 | 273 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_044450960.1 | polygalacturonase At1g48100-like [Triticum aestivum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5ZXS4 | Polygalacturonase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology