HalophFGD

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Basic Information
Locus ID: Tel5E01G818500
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 578695237 578697640 - Tel5E01G818500
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.40 54,388.25 Da 44.91 102.03 -0.05
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 14 47 2.1E-4 IPR001810
SUPERFAMILY SSF52047 RNI-like 164 358 4.32E-8 -
SUPERFAMILY SSF81383 F-box domain 4 47 1.14E-6 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 129 446 4.8E-12 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044365734.1 uncharacterized protein LOC123087706 isoform X1 [Triticum aestivum] 0
TrEMBL A0A3B6I3D2 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 7 AH03.3902, AH03.3918, AH03.3919, BH03.4191, BH03.4208 ...
CH07.287, Contig181.19
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0105390, gene-QOZ80_2BG0158860 ...
gene-QOZ80_7BG0611060, gene-QOZ80_8BG0652150
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.2HG0112990.2, HORVU.MOREX.r3.5HG0531720.1 ...
HORVU.MOREX.r3.2HG0119130.1.CDS1, HORVU.MOREX.r3.5HG0531850.1, HORVU.MOREX.r3.5HG0531930.1, HORVU.MOREX.r3.5HG0531960.1, HORVU.MOREX.r3.5HG0532100.1
Poaceae Lolium multiflorum 13 gene-QYE76_001376, gene-QYE76_035379, gene-QYE76_038799 ...
gene-QYE76_038947, gene-QYE76_039227, gene-QYE76_046284, gene-QYE76_046322, gene-QYE76_060244, gene-QYE76_060246, gene-QYE76_060247, gene-QYE76_060269, gene-QYE76_060272, gene-QYE76_060273
Poaceae Oryza coarctata 6 Oco05G005810, Oco05G005830, Oco06G005980, Oco13G014200 ...
Oco13G014520, Oco14G015090
Poaceae Oryza sativa 2 LOC_Os07g45010.1, LOC_Os07g45050.1
Poaceae Paspalum vaginatum 4 gene-BS78_02G373000, gene-BS78_05G160500, gene-BS78_K157300 ...
gene-BS78_K157400
Poaceae Puccinellia tenuiflora 20 Pt_Chr0105210, Pt_Chr0106234, Pt_Chr0106236, Pt_Chr0106238 ...
Pt_Chr0106239, Pt_Chr0106242, Pt_Chr0106247, Pt_Chr0106249, Pt_Chr0106252, Pt_Chr0106261, Pt_Chr0106266, Pt_Chr0106277, Pt_Chr0106345, Pt_Chr0106378, Pt_Chr0201295, Pt_Chr0301122, Pt_Chr0304904, Pt_Chr0305530, Pt_Ctg00080, Pt_Ctg00084
Poaceae Sporobolus alterniflorus 2 Chr0G002930, Chr27G016370
Poaceae Thinopyrum elongatum 14 Tel2E01G236700, Tel2E01G236800, Tel2E01G288000 ...
Tel2E01G288900, Tel2E01G972700, Tel5E01G818500, Tel5E01G819100, Tel5E01G820600, Tel5E01G820700, Tel5E01G821400, Tel5E01G821600, Tel5E01G822100, Tel5E01G822300, Tel5E01G824800
Poaceae Triticum dicoccoides 16 gene_TRIDC2AG013140, gene_TRIDC2AG017730 ...
gene_TRIDC2AG078710, gene_TRIDC2BG021490, gene_TRIDC4AG052070, gene_TRIDC4AG052220, gene_TRIDC4AG052290, gene_TRIDC5AG025170, gene_TRIDC5BG078190, gene_TRIDC5BG078340, gene_TRIDC5BG078380, gene_TRIDC5BG078500, gene_TRIDC5BG078510, gene_TRIDC5BG078530, gene_TRIDC5BG078540, gene_TRIDC7AG054630
Poaceae Triticum aestivum 32 TraesCS2A02G142200.1, TraesCS2A02G586000.1 ...
TraesCS2B02G128000.1, TraesCS2B02G128200.1, TraesCS2B02G167400.1, TraesCS2B02G597100.1, TraesCS2B02G597200.1, TraesCS2D02G110200.1, TraesCS2D02G110300.1, TraesCS2D02G600600.2, TraesCS4A02G343600.1, TraesCS4A02G344300.1, TraesCS4A02G346700.2, TraesCS4A02G347400.1, TraesCS4A02G348000.1, TraesCS5A02G150600.1, TraesCS5A02G407900.2, TraesCS5B02G412800.1, TraesCS5B02G526100.1, TraesCS5B02G526400.2, TraesCS5B02G527200.1, TraesCS5B02G530600.1, TraesCS5D02G155700.3, TraesCS5D02G417800.1, TraesCS5D02G525800.1, TraesCS5D02G526500.1, TraesCS5D02G526700.1, TraesCS5D02G527300.1, TraesCS5D02G527400.1, TraesCS5D02G529400.1, TraesCS7A02G393200.1, TraesCSU02G062100.2
Poaceae Zoysia japonica 1 nbis-gene-5246
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