Basic Information
Locus ID:
Tel5E01G767400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 555138279 | 555142180 | - | Tel5E01G767400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 98,052.48 Da | 39.68 | 86.50 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 465 | 500 | 2.6E-4 | IPR001810 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 169 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 353 | 1.61E-36 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 464 | 518 | 1.44E-7 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 228 | 357 | 2.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 227 | 9.2E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 128 | 169 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 212 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 305 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 122 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 21 | 60 | 0.13 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 135 | 170 | 9.019239 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 27 | 69 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 314 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 135 | 170 | 10.742378 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 156 | 170 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_020173842.2 | protein TPR1-like [Aegilops tauschii subsp. strangulata] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453MAU3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0527160.1 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G767400, Tel6E01G226400 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG012990 |
| Poaceae | Triticum aestivum | 3 | TraesCS5B02G497300.1, TraesCS6A02G100500.1 ... |