Basic Information
Locus ID:
Tel5E01G766600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 554793110 | 554815164 | + | Tel5E01G766600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 113,512.87 Da | 40.75 | 82.52 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 315 | 8.21547E-180 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 448 | 1.1E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 603 | 816 | 1.1E-42 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 5.9E-92 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 898 | 1003 | 6.3E-13 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 354 | 2.0E-107 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 455 | 6.54E-29 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1007 | 1.04E-134 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 600 | 864 | 2.4E-91 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 3.5E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 476 | 599 | 2.0E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 454 | 5.2E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 884 | 1011 | 1.6E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 7.8E-31 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 9.7E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_048532487.1 | alpha-mannosidase At3g26720-like [Triticum urartu] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6KQ72 | Alpha-mannosidase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology