Basic Information
Locus ID:
Tel5E01G698300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 519997689 | 520001691 | + | Tel5E01G698300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 25,724.67 Da | 52.28 | 53.66 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 25 | 163 | 7.23507E-61 | - |
| Pfam | PF00628 | PHD-finger | 147 | 194 | 4.5E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 28 | 142 | 8.9E-24 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 136 | 197 | 8.42E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 140 | 8.4E-28 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 213 | 3.8E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 147 | 194 | 1.1E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 26 | 143 | 4.6E-40 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 145 | 196 | 9.116199 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 26 | 143 | 22.442148 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 148 | 193 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 227 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_037436617.1 | chromatin remodeling protein EBS-like isoform X1 [Triticum dicoccoides] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5ZUZ5 | BAH-PHD domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology