Basic Information
Locus ID:
Tel5E01G586400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 459232921 | 459234752 | - | Tel5E01G586400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 36,599.01 Da | 36.71 | 87.15 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 184 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 140 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 271 | 1.01E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 268 | 2.3E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 187 | 227 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 140 | 6.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 95 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 51 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 184 | 4.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 95 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 187 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 193 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 149 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 107 | 143 | 10.23196 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 82 | 96 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 127 | 141 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 4.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 330 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048531594.1 | coatomer subunit beta'-2-like [Triticum urartu] | 0 |
| Q6H8D6 | Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209000 PE=3 SV=2 | 0 | |
| TrEMBL | A0A453LNQ3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G586400, Tel5E01G586500 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G367700.3, TraesCS5D02G376600.2 |