Basic Information
Locus ID:
Tel5E01G577600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 453406348 | 453408120 | + | Tel5E01G577600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 66,151.26 Da | 57.88 | 60.34 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 324 | 368 | 8.9E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 239 | 303 | 7.0E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 310 | 3.83E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 248 | 1.68E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 378 | 3.04E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 253 | 1.3E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 299 | 556 | 2.8E-75 | - |
| SMART | SM00647 | ibrneu5 | 239 | 303 | 2.9E-17 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 311 | 374 | 0.011 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 216 | 8.579733 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 166 | 378 | 41.139915 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 352 | 361 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037438744.1 | probable E3 ubiquitin-protein ligase ARI5 [Triticum dicoccoides] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453LM39 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology