Basic Information
Locus ID:
Tel5E01G519600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 425013398 | 425014042 | - | Tel5E01G519600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 22,514.39 Da | 56.95 | 87.29 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 130 | 173 | 1.30305E-18 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 173 | 5.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 179 | 6.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 182 | 8.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 172 | 4.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 173 | 12.415513 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17450.1 | RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a. | 0 |
| RefSeq | XP_037432943.1 | probable E3 ubiquitin-protein ligase ATL44 [Triticum dicoccoides] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MVV3 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 4 | COCNU_07G002090, COCNU_09G004210, COCNU_10G001500 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706422 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09710 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0110s00028.v1.0, Dusal.0930s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g15870, gene.Thate08g15890 |
| Poaceae | Echinochloa crus-galli | 1 | AH03.2740 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0528150, gene-QOZ80_6BG0482140 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0499860.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007420, gene-QYE76_007421 |
| Poaceae | Oryza coarctata | 1 | Oco17G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g36500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G255800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700057, Pt_Chr0700062 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G014190, Chr11G008080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G519600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG048290, gene_TRIDC5BG052220 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G326800.1.cds1, TraesCS5A02G326900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb319810_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35250 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32193 |