Basic Information
Locus ID:
Tel5E01G354800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 326313192 | 326314695 | + | Tel5E01G354800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 29,704.04 Da | 53.66 | 72.11 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 133 | 184 | 2.6E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 236 | 9.72E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 45 | 128 | 4.01E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 190 | 3.71E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 191 | 251 | 1.9E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 134 | 4.2E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 191 | 243 | 0.84 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 119 | 190 | 0.0023 | IPR002867 |
| SMART | SM00184 | ring_2 | 48 | 96 | 0.0038 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 44 | 250 | 20.171207 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 94 | 8.56498 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_037434521.1 | E3 ubiquitin-protein ligase RNF144B-like [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6LMD1 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.2027, BH03.2378 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481120.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco17G005560, Oco18G005670 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g26460.1, LOC_Os11g38710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG034790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215700.1, TraesCS5B02G214200.1 ... |