Basic Information
Locus ID:
Tel5E01G354700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 326227092 | 326230578 | + | Tel5E01G354700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 70,349.61 Da | 62.05 | 71.33 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 505 | 549 | 4.8E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 441 | 485 | 3.2E-6 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 355 | 400 | 1.1E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 501 | 550 | 6.45E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 351 | 420 | 9.64E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 499 | 582 | 4.5E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 349 | 438 | 6.5E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 427 | 494 | 0.028 | IPR002867 |
| SMART | SM00184 | ring_2 | 451 | 518 | 3.3 | IPR001841 |
| SMART | SM00184 | ring_2 | 355 | 402 | 0.022 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 495 | 563 | 0.022 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 355 | 400 | 9.715714 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 351 | 565 | 23.438505 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 373 | 382 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044401305.1 | probable E3 ubiquitin-protein ligase RNF217 [Triticum aestivum] | 0 |
| Q8TC41 | E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4 | 0 | |
| TrEMBL | A0A3B6MS15 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |