Basic Information
Locus ID:
Tel5E01G312800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 289863412 | 289880209 | + | Tel5E01G312800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 193,721.80 Da | 46.94 | 100.45 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 5 | 82 | 9.6E-8 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 161 | 387 | 1.1E-30 | IPR002182 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1368 | 1548 | 3.3E-21 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 564 | 606 | 3.6E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 497 | 892 | 9.75E-59 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 157 | 425 | 1.1E-49 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 809 | 1134 | 2.64E-13 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1337 | 1630 | 4.62E-43 | IPR011009 |
| Gene3D | G3DSA:1.10.10.10 | - | 406 | 510 | 1.5E-7 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 541 | 916 | 1.3E-69 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 141 | 317 | 3.7E-25 | IPR027417 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1430 | 1647 | 1.7E-35 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 4 | 108 | 3.2E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 955 | 1147 | 7.9E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1319 | 1429 | 7.6E-16 | - |
| SMART | SM00369 | LRR_typ_2 | 762 | 785 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 573 | 596 | 2.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 619 | 642 | 5.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 878 | 901 | 300.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1355 | 1629 | 22.025732 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 621 | 642 | 7.00349 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 181 | 196 | 1.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 264 | 278 | 1.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 360 | 374 | 1.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 784 | 800 | 1.0E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1662 | 1677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1683 | 1716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1662 | 1716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1310 | 1330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1310 | 1331 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G11520.1 | calmodulin-binding receptor-like cytoplasmic kinase 3. high overall homology to CRCK1 | 0 |
| RefSeq | XP_037440913.1 | putative disease resistance protein RGA3 isoform X1 [Triticum dicoccoides] | 0 |
| Q9ASQ5 | Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRCK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LL70 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1775, CH03.1930 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0485990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004556, gene-QYE76_017737 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K051400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702607, Pt_Chr0702633 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030020, gene_TRIDC5BG031660 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G184900.1, TraesCS5B02G182900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310060_P001 |