Basic Information
Locus ID:
Tel5E01G258000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 241028027 | 241028485 | - | Tel5E01G258000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 16,740.10 Da | 53.45 | 95.59 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 89 | 133 | 5.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 137 | 1.39E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 140 | 6.0E-20 | IPR013083 |
| SMART | SM00744 | ringv_2 | 89 | 133 | 0.0072 | IPR011016 |
| SMART | SM00184 | ring_2 | 90 | 132 | 2.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 133 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044984552.1 | RING-H2 finger protein ATL56-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9ZV51 | RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6YFC7 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.71, CH04.137, CH05.56 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672430, gene-QOZ80_9BG0696010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003591 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G012300, gene-BS78_08G020300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G258000 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G147900.1.cds1, TraesCS5D02G144900.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb195260_P001 |